WinOnMacs released Putty++ 9.1 for Microsoft Windows today.
Never play alone - with Plink, you'll discover gamers who play the way you do! - Enjoy sharing, voting, and discussing games. High-quality voice calls, group chats, private messages – feel free to use either the mobile or desktop version. With Plink, there are no limits! Plink free download - Plink, PLINK - LFG & Gamers community, Beep! Musical Instruments - Have fun with Pickatale while learning how to read!, and many more programs. Is a neutral-toned, medium pink with a pearl finish. It is a permanent lipstick that retails for $20.00 and contains 0.1 oz. 7.1 Starting Plink. Plink is a command line application. This means that you cannot just double-click. Simply download PLink.dmg and copy PLink.app to the Applications folder. Double-click to start it, just like any other application.
How to download mods on sims 3 mac. About PuTTY++
PuTTY++ is a telnet and SSH client for Windows and UNIX. It supports several network protocols, including SCP, SSH, Telnet, rlogin, and raw socket connection.
The cost of Putty 9.1 is only $15.00. Anyone who has purchased Putty in the past three months is entitled to a free upgrade. Putty comes with three months of upgrades and of course a 14-day money back guarantee.
Supported Protocols:
Version 9.1 New Features:
We now use FastSpring as our preferred storefront, you can pay with Credit / Debit Cards, PayPal, Amazon payments, Wire Transfer etc. etc. This store is very secure, simple and fast.
Getting startedPlink Run Command
First, if plink and/or plink2 are not installed on your system, download and unzip the appropriate binaries (v1.9, v2.0). (Or clone from GitHub and recompile.) As alpha and beta testing continue, plink2 will become increasingly usable on its own, but for now it's better to think of it as a supplement to rather than a replacement for v1.9.
Then you can verify that both programs are functional with the following pair of commands:
./plink --dummy 2 2 --freq --make-bed --out toy_data
./plink2 --bfile toy_data --freq --out test2
How to download a movie to your tablet. You should see something like:
PLINK v1.90b6.13 64-bit (30 Nov 2019) www.cog-genomics.org/plink/1.9/
(C) 2005-2019 Shaun Purcell, Christopher Chang GNU General Public License v3 Logging to toy_data.log. Options in effect: --dummy 2 2 --freq --make-bed --out toy_data 16384 MB RAM detected; reserving 8192 MB for main workspace. Dummy data (2 people, 2 SNPs) written to toy_data-temporary.bed + toy_data-temporary.bim + toy_data-temporary.fam . 2 variants loaded from .bim file. 2 people (0 males, 2 females) loaded from .fam. 2 phenotype values loaded from .fam. Using 1 thread (no multithreaded calculations invoked). Before main variant filters, 2 founders and 0 nonfounders present. Calculating allele frequencies.. done. --freq: Allele frequencies (founders only) written to toy_data.frq . 2 variants and 2 people pass filters and QC. Among remaining phenotypes, 1 is a case and 1 is a control. --make-bed to toy_data.bed + toy_data.bim + toy_data.fam .. done. ![]()
PLINK v2.00a3 AVX2 (30 Dec 2019) www.cog-genomics.org/plink/2.0/
(C) 2005-2019 Shaun Purcell, Christopher Chang GNU General Public License v3 Logging to test2.log. Options in effect: --bfile toy_data --freq --out test2 Start time: Mon Dec 30 21:58:37 2019 16384 MiB RAM detected; reserving 8192 MiB for main workspace. Using up to 8 compute threads. 2 samples (2 females, 0 males; 2 founders) loaded from toy_data.fam. 2 variants loaded from toy_data.bim. 1 binary phenotype loaded (1 case, 1 control). Calculating allele frequencies.. done. --freq: Allele frequencies (founders only) written to test2.afreq . End time: Mon Dec 30 21:58:37 2019
(Remove the './' prefix if the program was installed earlier, or if you've added it to the system PATH.) If either command fails, verify that you downloaded the correct binaries for your machine, and consult the plink2-users Google group if you're still stuck.
Okay, what did these commands mean? And what just happened?
PLINK parses each command line as a collection of flags (each of which starts with two dashes1), plus parameters (which immediately follow a flag, and never start with a dash unless that dash is immediately followed by a digit) for those flags. The first command included four flags: --dummy, --freq, --make-bed, and --out. They specify the following three things, which are part of almost every PLINK run:
So this particular combination makes PLINK 1.9 generate a new 2x2 dataset, write an allele frequency report to toy_data.frq, and save the dataset to toy_data.bed + .bim + .fam. Similarly, the second command makes PLINK 2.0 write its own allele frequency report to plink2.afreq.
1: Actually, that was a lie. With the exceptions of --1 and --23file, PLINK 1.9 and 2.0 allow you to use a single dash in front of each flag. In exchange for saving you some keystrokes, please do yourself a favor and avoid filenames that begin with a dash.
The allele frequency reports are different?..
You may have noticed that the file extensions of the v1.9 and v2.0 allele frequency reports aren't the same, and there are several formatting differences between the two files, though they clearly contain the same information. This is true for many commands; PLINK 2.0 cannot generally be used as a drop-in replacement for previous PLINK versions. We realize this can be a major annoyance, and will continue maintaining v1.9 for a long time to come for those who need full backward compatibility. However, v2.0's reports are better-standardized (header lines preceded by '#', tab-delimited, column headers are consistent with VCF, etc.) and more flexible (lots of optional column sets); hopefully, this'll ultimately make your life easier and be worth some transitional headaches.
Interpreting our flag usage summaries
The rest of this documentation has many one-line summaries describing the parameter sets accepted by particular flags, followed by discussions of flag functionality and the effects of optional parameters. We use the following conventions in our one-line usage summaries (these were adjusted in March 2019 to be more consistent with community norms):
Plink Program
--freq ['counts'] ..
--glm ['perm' | 'mperm='<value>] ..
If you're already familiar with PLINK, this should help you skim over stuff you already know. If there are just one or two flags you need to look up, you can quickly find what you need in the sidebar; try the search box if the correct page isn't immediately apparent.
For the newer bioinformaticians out there, here's our first full flag description.
Setting the output file prefix
--out <prefix>
By default, the output files generated by PLINK 2.0 all have names of the form 'plink2.<one of these extensions>'. This is fine for a single run, but as soon as you make more use of PLINK, you'll start causing results from previous runs to be overwritten.
Therefore, you usually want to choose a different output file prefix for each run. How to download a video off facebook mac. --out causes 'plink2' to be replaced with the prefix you provide. E.g. in the example above, '--out test2' caused PLINK 2 to create a file named test2.afreq instead of plink2.afreq.
Since the prefix is a required parameter, invoking --out without it will cause PLINK 2 to quit during command line parsing:
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[chrchang:~/plink-ng]$ ./plink2 --bfile toy_data --freq --out
PLINK v2.00a3 AVX2 (30 Dec 2019) www.cog-genomics.org/plink/2.0/ (C) 2005-2019 Shaun Purcell, Christopher Chang GNU General Public License v3 Error: Missing --out parameter. For more info, try 'plink2 --help <flag name>' or 'plink2 --help | more'. Plink Tutorial
In the rest of this documentation, we will continue highlighting full command lines in purple, default parameter values in orange, and sample parameter values you can freely change in green.
Citation instructions
If you use PLINK 2.0 in any published work, please cite both the software (as an electronic resource/URL):
Package : PLINK <version>
Authors : Shaun Purcell, Christopher Chang URL : www.cog-genomics.org/plink/2.0/
and the manuscript(s) describing the methods you used. Our primary methods paper is:
Chang CC, Chow CC, Tellier LCAM, Vattikuti S, Purcell SM, Lee JJ (2015) Second-generation PLINK: rising to the challenge of larger and richer datasets. GigaScience, 4.
PLINK 2.0 includes implementations of many analyses that were developed by other teams. The original sources are summarized below.
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